NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10042425

Scaffold DelMOSum2010_c10042425


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10042425 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2359
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F023860Metagenome / Metatranscriptome208N
F027854Metagenome / Metatranscriptome193N
F085570Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_100424252F003677AGGMVDEALYFFEKDVGKKVYEMEYEITYATKWQILAEDKDQAFKIWLENHKVDIATEDGKDVVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIADES*
DelMOSum2010_100424254F085570GGAMHIDSYKIWSYDYDYKNGKKSKTTSIKQHLVSEECIDSRGLINLLSDLDNAWHNGYGKNIKIEVTFEPHEGE*
DelMOSum2010_100424255F023860AGGAGMDKLKEMFELRNAIRHFLESKLEAKVQGAGMSISEPSSADISFKIDNTNYVLTIDEV*
DelMOSum2010_100424257F027854AGGMTDKEAMKLHELIDELRAKLQKSLKEVLQLRKDLDLEREEHQLTQLRYENVKNAINKEVDRLNQRRPDVEIPADEKGVK*
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