Basic Information | |
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Taxon OID | 3300000115 Open in IMG/M |
Scaffold ID | DelMOSum2011_c10002096 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12844 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (45.45%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005364 | Metagenome / Metatranscriptome | 403 | Y |
F016882 | Metagenome / Metatranscriptome | 244 | Y |
F061348 | Metagenome / Metatranscriptome | 132 | Y |
F080134 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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DelMOSum2011_1000209615 | F061348 | GAGG | MKKSDIRRIIKEELINELRASSINEAFGDPLIAKLDKLGRGSLHTRYRKFWNAAAKTYDIAWDKLPKGSFRKVQPSSPDVKKGMAFYVINQDIANPFASSKGWAYDRTLRGPAVLAVTVDNKIQYHGRQGGVGSKTATSSYRGTPDPIGKGAYGTMMVKKLRELADVVYVFDLESYRGGTSALKAKRAELKLGKDTFKDAKAWKQANLNRYKEILNARVGTRDQVDSMVAKIVQLSNNIVAESMGLPKLGRYGQIMATVNGKEVELENVTKAMSKALYYYGEYIQIQNDMEKSGDEDYSKKYNEDRMKQKAGDIKIIMNKFKSGKLDGWY* |
DelMOSum2011_1000209623 | F005364 | GGA | MDKQDLANRIRGLVKEEVASVLNERTYKYGGLLDAEEFDPIDPEIHIVGFGTMNRSSLRTEIATRIEGALKTAQDASAGDTNSYDKYKSLEGVFEDKGVLMLQIKAEIEIAQQLEGLRXKGGRRSQPIPKQF* |
DelMOSum2011_1000209628 | F016882 | N/A | MSYYVSKVKIATDTPKGVKWQTETYLVNAVSVTHAESLVVEDFKDGGVEFEVKSVSSSQICKVINNSKNV* |
DelMOSum2011_100020967 | F080134 | AGGA | MAKIYERNPDSGEIRSRDQHNVKATKAQKAISRSEILDEIWAANKHVKDGEWYVKLSDVCAILGEDYARKEQ* |
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