Scaffold DelMOSum2011

Basic Information
Taxon OID	3300000115 Open in IMG/M
Scaffold ID	DelMOSum2011_c10015849 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000115 Open in IMG/M

Scaffold ID

DelMOSum2011_c10015849 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3746
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3746

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F015659	Metagenome	253	Y
F020445	Metagenome / Metatranscriptome	224	N
F026438	Metagenome	198	N
F073760	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100158491	F073760	N/A	MMENNSITLDLYEMQSAAHLGILRCLESEXXQEKWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQIPKNNNSLIIRPKAK
DelMOSum2011_100158494	F026438	N/A	MTNHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAKETAQNHLDNIAELDNQDWQDEIEQVLWTPPVNTYWLMYIDLVGQDLFGDLKNKFGTVSLTKTKGWTYTNVKCPDRPFYSDVQQISLYQKSLGLKPFLSYASNCDRKLFTQENCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDKLAWLCCPDF*
DelMOSum2011_100158495	F006892	AGG	MSDMGIIKPLRDRVRDLEVINEAHQKKNGQLRVEIQDKDKKINELIERINNPTKRMRDQGEL*
DelMOSum2011_100158496	F015659	AGGAG	MKNGLAEAIKKFRESIDDKDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFRANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKETLKPIVKLVPKKKVNIEQMANDWIEVLKKTAQHSVSVGKFEQNLNPLRKEYISELQTIYTDLIQQQRIDTAYISLQKQITNRKQ*
DelMOSum2011_100158497	F020445	AGGA	MSDYDNSAALWKRQARDTDVAGKKYPHYNGNITVGGKKMNLAAWXXTEKTKEGQPDISLKISEIVAKEDAPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2011_c10015849

Overview

Ecosystem & Geography

Associated Families

Sequences