NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2011_c10019707

Scaffold DelMOSum2011_c10019707


Overview

Basic Information
Taxon OID3300000115 Open in IMG/M
Scaffold IDDelMOSum2011_c10019707 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3235
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035755Metagenome171N
F043385Metagenome156Y
F083251Metagenome113N
F093725Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2011_100197074F043385N/AMIIRKVSGLWIVERQHSGQIVFSHKNRMTCYEWMFKGINYA*
DelMOSum2011_100197075F035755N/AMNREELKRLWFSIPHEKNKVPTRTIVVTLDKHPSRIGQGVVQITRDDSDGYSCFSTHQKNPIAWALNKMKDKCQDRLEYNINYDFSKYKLVIN*
DelMOSum2011_100197076F093725N/AMNKEKVEQHLENAKRFRKPNYKPLMEYIDWSEITENYDLKTGDLCYSDYNKLEIILSNFIKNNK*
DelMOSum2011_100197078F083251N/AMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
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