Scaffold DelMOSum2011

Basic Information
Taxon OID	3300000115 Open in IMG/M
Scaffold ID	DelMOSum2011_c10023066 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000115 Open in IMG/M

Scaffold ID

DelMOSum2011_c10023066 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	2904
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (100.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

2904

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (100.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F011192	Metagenome / Metatranscriptome	294	Y
F015812	Metagenome / Metatranscriptome	252	Y
F031261	Metagenome	183	Y
F047975	Metagenome / Metatranscriptome	149	Y
F059441	Metagenome	134	N
F100938	Metagenome	102	N
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100230661	F059441	GGAGG	MKTWSSTIKYTVFDMGRECETEEEYREWVKETFILDHNIYLRDDEITNIEREELYNE*
DelMOSum2011_100230662	F003976	GGAGG	MSRTYNDYYFEKLDILDTLDKLEMSVRFLNVWVNKPMGLENARYVLEKNANQEFNWFSRDMVKELLEEDDDENN*
DelMOSum2011_100230663	F047975	AGGAGG	MRITKEEWAENTADGMDWKDLYRIAYDVMLDSVKDMSNKEFKEYLIECGYEEVDDDS*
DelMOSum2011_100230664	F011192	AGGAGG	MTAKEMTDNNFINFQDDFYNLLEKYGVSSIDIEHPQFETICNIRNKVVEFIEQETWEEDDEQN*
DelMOSum2011_100230665	F031261	GGAGG	MNRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAIKWDVYIYQGGR*
DelMOSum2011_100230666	F100938	AGGAGG	MSDWLDGTKPKYIECVYETAIEFDLEELDIDYDTIDDYHVRYGTLQVTFKDGTIKSYEGNQMETDYKWARYENVLDESWNKVEGLN*
DelMOSum2011_100230668	F015812	GAG	MNKTLYKRLEDICAREYVVNKLSEHKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRVEEHLSHMVSRSLADAHIGTTHD*
DelMOSum2011_100230669	F106085	AGG	MTNNPLESLRKKLSFLLDNLKNKFRMLIKSKQNNKIIIKKDIKNNIPKHLKGLNNKQLKDLQSLFKKRI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2011_c10023066

Overview

Ecosystem & Geography

Associated Families

Sequences