NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10000732

Scaffold DelMOSpr2010_c10000732


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10000732 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)20570
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058925Metagenome / Metatranscriptome134N
F059914Metagenome / Metatranscriptome133Y
F062173Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_1000073214F058925AGGMKITGKQTVEVEISEAQRHLIALDYISELFDWDTDYFIEDGWVIKREIAHTSHSFEIKNKVREATKKDQCLYDIFKVLRKQSF*
DelMOSpr2010_1000073216F062173N/AMSFRYDSRVIGPNGYKELMVVVLNKKENPIDSCCYKIDSPQVHDLMCAKKGAHDFGIKGWKLDPLDQYQGFANKVVKQKT*
DelMOSpr2010_1000073241F059914AGGMNEVKLTLQENEANVLLQLIDVAVKSQGLQVAEAASFLATKIREQAQAQLPKPEGEETEAETAE*
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