Scaffold DelMOSpr2010

Basic Information
Taxon OID	3300000116 Open in IMG/M
Scaffold ID	DelMOSpr2010_c10002115 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000116 Open in IMG/M

Scaffold ID

DelMOSpr2010_c10002115 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	11731
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11731

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (94.12%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F025294	Metagenome / Metatranscriptome	202	Y
F041743	Metagenome	159	Y
F052627	Metagenome / Metatranscriptome	142	Y
F071194	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000211511	F052627	AGG	MSKRSDLISQITTNLSGQSNISISSELPFDSGGNPLYEKNMNTVYVDEQELNVEQLYRTLDQGDVNQTTTTINAYFSTDAKNQFNNIDTVVANLLIARNVVTNVLDKNSDYETEITDDVITYTFEYNFITV*
DelMOSpr2010_1000211514	F025294	AGGAG	MDTASTDTAVQPEAQVEPGTDTATSVETEQSASADTKSDKSTTPVVEQREGKLFVDGVRVYTRDDTNKIAANAKHEVEKNILNDLNVDSIDQVKQVVSTLQETDVAQGQGLNVESLRDAVKKREATVEELKAQVTSLKTDLLLKDHMGQLQSAMPNAWTPTQRDSVIKLMKADGMLAVEGDTFAIRNGNDFLTVDGEKPDYAGAVELKAKELGLSLGKKGVDVQYGETTGTSKASADPNAPVNDAKLNSDSEYRAAYMKIRQYQPSLGKSSVSDKMVKDMLKKMKG*
DelMOSpr2010_1000211515	F071194	GGAG	LARFNYYDFVTRSHELYDKYYNDWQLALKSFYGGVEYRDGQYLKYYSSDATTPAEVINTYDVDETGATTNVYKSQVVRSTDSESANAGEQYASNFYYEKLQNVPVYPYTRLYTSEFNAILFRTPPSRVLPDTPEVNDFLNNADGDENSLNEFMSMVDTYTTLTGVVWISCVKPAGAEYPKWRMHKPTDVTNWSYSYTASGDLQLNKIVIRIAQDSDVEILQYFTKDTIETIFMPSDEESELDLPEGAEFVQGVNEDDKGFYRIIQPNELGYIPVRPVYQSTPIHRGIGHTPIFDIAQIQRSVYSDMGEVYQAVSYSIHPVNVIDESTLARNGGSVSAEPGSVIITEAGIAGSPAYTFEFVSPDLSSLERLQSLIDQKIDKMNQVAMIRSDELIKASRSGVQIEQYDSKLEAFIRKKATALENAEYNLWKIWFDWQDQPMPEDLSISYNRLYSQKGVENEIKEMNMLLDAYQRYADVFIGDAEEYTIRDYETEAEAEAEANRLGGSGTHSHTREDGLVTYMPFTTHAEYELRMEMMTGVDQAEAPQFKEELKSKMMERLDQLIKSTYSNNSL*
DelMOSpr2010_100021154	F041743	AGGAG	MSLQTIIDNATYVEVDRREQFAATMSRSGHYKTADRNVNVYSFTVGMHEGLTYSTNRGALEDIYTTGSTAEANISLNNNSGMNYLTAYQGDISGAEINNIVMVGSNGSELYVDCSSATGSGNLFEKGDYIQPKGNTDTYRYPYQVTSDVAFSTSANITVPVHRPVLSQSGVALTSGGIKVGNDVRWQVKITNLPKYSVVPHDRIQFSADFELVEVLS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSpr2010_c10002115

Overview

Ecosystem & Geography

Associated Families

Sequences