NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10004905

Scaffold DelMOSpr2010_c10004905


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10004905 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7460
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067700Metagenome / Metatranscriptome125N
F073492Metagenome / Metatranscriptome120N
F082630Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_1000490512F067700AGGVKTMAESWGEWFKVPMVGVIGFTVTGSTIDEWLRIAIAIATLVYTIAKAGNAVIEFKRKRNEKRN*
DelMOSpr2010_1000490513F082630GAGMKNAIEIGFLATALFMLSGCAALEQATGWAYEAEVTTQVLPDGSEQSVTNWVTKPNVKTGITIGGQLAPQPVGSIASQAILALLGIGAAIRGRQWKKAAVSGVEAAQEFKAALNKSNAKGKLDGI
DelMOSpr2010_100049053F073492N/AMSYRKQTEEAFKAYLQGQVGVPVYAGTNDTIKAMPCVVVAFVGASQNPPNTGNMDVTLTISVQSEIDEDGQPNALDVHDEILSAVEDSLFWPSLQAINTTATDLHVFGVSEHSGIERDVEGTMLRESITLTIPAALGDF*
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