Basic Information | |
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Taxon OID | 3300000116 Open in IMG/M |
Scaffold ID | DelMOSpr2010_c10011405 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4590 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005010 | Metagenome | 415 | Y |
F008239 | Metagenome / Metatranscriptome | 336 | Y |
F077986 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOSpr2010_100114051 | F008239 | AGG | MTNREILLEMYEKLWNADKDKWAWNVILKDTLEKIETNNDTNQ* |
DelMOSpr2010_100114052 | F077986 | N/A | MKEGTLVWIVASVENDAFQANCDNDEIVVEPHGYKAMPLYADKDWVRPLTEDEVKAYNL* |
DelMOSpr2010_100114054 | F005010 | N/A | MIRKRKHIREIQKYLEMLMIDNVNMTIQASRFGWTPELQNQITNSALLIRKYQRRLRLIKM* |
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