Scaffold DelMOSpr2010

Basic Information
Taxon OID	3300000116 Open in IMG/M
Scaffold ID	DelMOSpr2010_c10016195 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000116 Open in IMG/M

Scaffold ID

DelMOSpr2010_c10016195 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3723
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3723

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (15.38%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007611	Metagenome / Metatranscriptome	348	Y
F009491	Metagenome / Metatranscriptome	317	Y
F030052	Metagenome	186	Y
F058131	Metagenome	135	N
F059877	Metagenome	133	N
F072842	Metagenome	121	Y
F099111	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1001619511	F007611	N/A	MKKKTITVLDYSSARVFQYTVKINVHSEKFITFKGHRLKDVEWMEHQISSIITK*
DelMOSpr2010_100161952	F009491	N/A	MSNTIKTNQIKILKINNKTYLPYQLHQLPKYFDKYSTDYFNLKGYTYISLDTIKKHNKFFNLQNFKDRLTFNKDIHYTQKR*
DelMOSpr2010_100161953	F099111	N/A	MTQEIVERIIDETVDTIIDSIDEKTVDYMFEYGNYEETDNQFVEDLIVFKQQVITELFNRINNK*
DelMOSpr2010_100161955	F072842	N/A	MSRLHRELLKQQLMNYDYSKTPVNKMILVELDCSQITVQYEGPDGFTHWKFSGGPIESMVECMNKEVSRHPDYDLIIVDKYTK*
DelMOSpr2010_100161956	F030052	N/A	MKNKYVKKMIELEELLKHHDWYYAMSDDHRYYSSGRKSYEKIWKIMDELHKNNYGVMAENLYDTYKK*
DelMOSpr2010_100161957	F058131	N/A	MKITINQVGKTYEVSNDNKVKITHNHDAIVSVCGEYFKNKYTNEWLSELEVQDYYNAHKLDEEYENKYY*
DelMOSpr2010_100161959	F059877	N/A	MKINNFIATAVAATLALTSCESRQEQYEQDLLDACNVKIMSDNYVKTTAISSCTGKDTSFTVDFGVAYVVNVANLPGIDDVRYDDYEFYAMLDGRKVKGFQNLKDQISDRAQNIIDGNINLQLSGHSDLAVYLLHENMYKAQFFVENGDGQIFELQLKEVY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSpr2010_c10016195

Overview

Ecosystem & Geography

Associated Families

Sequences