Scaffold DelMOWin2010

Basic Information
Taxon OID	3300000117 Open in IMG/M
Scaffold ID	DelMOWin2010_c10000159 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000117 Open in IMG/M

Scaffold ID

DelMOWin2010_c10000159 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	38371
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (95.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

38371

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (95.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014905	Metagenome	259	Y
F017486	Metagenome / Metatranscriptome	240	N
F022107	Metagenome / Metatranscriptome	216	Y
F048584	Metagenome	148	N
F049548	Metagenome	146	Y
F058952	Metagenome	134	N
F091751	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000015929	F022107	GGAG	MIDEEVERKIHIAGLVGAIFGFISGAGLMALVGIIF*
DelMOWin2010_1000015934	F091751	GGA	MSEMFYATPNQMYRINKLTHLLSGASGSPSASLPISKSDADALIKDMIKAEKLLSNSDTEEPKKVKRLKKAKPNRDDEIKVIKISI*
DelMOWin2010_1000015939	F017486	GAGG	MNKIIITNAHAHGFAFACDTETQGQVFIPVHIADGFDLAPGDEINAVLVPNYQDKSDKGTPWQAVKLQRPVEVVQVTSKEHLNEWYEGLSEAPEDEVCEKAIIDKSQTLNNEALDANLLDFILAAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQQRPTMILWAAAAKTFIEVV*
DelMOWin2010_1000015941	F049548	AGGAG	MTEREEQIAQATQDFLMALPDKMKNGHLGSVICTMFEAFGLIHETRVDICEGVLNVMLEHDMRDDERAAQAADEFLARAAAKARK*
DelMOWin2010_1000015943	F058952	GGAG	MTNDTKPSEKDIALWERIKQEMLDHADVVSGFTDDEREALNELRWTSMSMSEDVNYLMDFCYSDVIDFCRAADFLCEEYSWNTSENEDKRDIGKKSLALAEALRSDAGDGPHLSYGQAKDFGGIYPRITGLLHTKPNKYQMERFAECGITWEGEVDEH*
DelMOWin2010_1000015951	F048584	GGAG	MQDYDLTQYCNEIADEIARDASGIEQAMDWAHESADGSEYVIYYAKAHTICQNCNIEQGEDFFSECYGGEHGKSYDEIACIMAYGEINARICARLWQIFEEREEEAA*
DelMOWin2010_1000015955	F014905	AGG	MKPVPFHKLSPKMKNIRMNQWIKSYIGRGLSLEDAQHAARWRAGHWKLNARMEKVLAEIEDV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOWin2010_c10000159

Overview

Ecosystem & Geography

Associated Families

Sequences