NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold DelMOWin2010_c10000407

Scaffold DelMOWin2010_c10000407


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10000407 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)26411
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014509Metagenome262Y
F042972Metagenome / Metatranscriptome157N
F043440Metagenome / Metatranscriptome156Y
F067842Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_1000040728F043440AGGMKFFIIVSFIMANTAALDRPLYVFAKPNFETVTECRDYVAVMHQRIYSAASASYNHKHKPESIYCITTDEVKDIFKYSYDQKEKKNI*
DelMOWin2010_1000040735F014509GGAGMGIHIGKHKRSTSWIGRFDPKDPKDMAEFQMVKSIVKACNSNKTKFRVEKKGRKPTNGFTYFGDCVGGIKNATLWDVYVYKRTYDYYNNKRIG*
DelMOWin2010_1000040751F042972GGAMVKFDNIFYVGDTVETKHGLNKIVKIELMPEPRHYSKCGINVEKMFTNMKNYCIIDLDNKHFVYGDEVELCR*
DelMOWin2010_1000040752F067842GGAGMHEYQTSIYTQDSVTKSITLSVVELGFSEKNSVDNAFDTFKCLALNLNEILKIETKGI*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.