Scaffold DelMOWin2010_c10008968

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold DelMOWin2010_c10008968

Scaffold DelMOWin2010_c10008968

Overview

Basic Information
Taxon OID	3300000117 Open in IMG/M
Scaffold ID	DelMOWin2010_c10008968 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	5789
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041743	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100089684	F041743	GGAG	MSYQTIIDNATYVTIDTRKVTAQSISRSGQYKTSERSPAPFMITVGMHDGLKYSENRSVIQDIYTVGRTTESNISLNNNSGMNYLTNYQGDIETAQLNNITLNSVFGNEIYVDCSGATGSGNLFEKGDYIQPKGNTDTYRYPYIVTSDVAFSTGSNITIPVHRPILSQTGVALTSGGIKVGNDVRFHLKCMDLPSYSVVPYDLVGFSGEFGFIEVIT*

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