Scaffold DelMOWin2010

Basic Information
Taxon OID	3300000117 Open in IMG/M
Scaffold ID	DelMOWin2010_c10009645 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000117 Open in IMG/M

Scaffold ID

DelMOWin2010_c10009645 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	5535
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

5535

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F015659	Metagenome	253	Y
F020445	Metagenome / Metatranscriptome	224	N
F026438	Metagenome	198	N
F092873	Metagenome	107	N

Family

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000964510	F004990	GGA	MYGDPKKKCCACENTADLKEGNKYYCCDHYALYVLGKPMSQIEKELNE*
DelMOWin2010_1000964512	F011253	GAGG	LNKKLEIDKIIKNFAKNKSLPYSAAITKIKKDRKGYFQAKDIKQKKQSLSTDRFQQYLKDIQENDTE*
DelMOWin2010_1000964513	F004629	AGGA	MIPNRLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFLMIDRQYGISSDKDTYKGQDKPKMKIRLNGEQLQVYEFCILLLVKASEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALEELKSLYNRKGYKFICK*
DelMOWin2010_100096453	F020445	AGGA	MSDYDNSAALWKRQARDTDVAGKKYPQYSGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEDAPF*
DelMOWin2010_100096454	F015659	AGGA	MKNGLAEAIKKFRDSIDDKDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKEITKPIIKPTAKPKANTKQLADEWIEVLKKTATHSVSVGKFEQNLNPLRQEYLSDLKQINSDLIQQQRIDQEYISLQKQITTNRTK*
DelMOWin2010_100096455	F006892	GAG	MGIIKPLRDRVRDLETINEAHQKKNGQLRVEIQDKDKKINELIERINNPTKKMREQGKL*
DelMOWin2010_100096456	F026438	N/A	MTNHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAKETAQNHLDNINDLGQYEWSDEQEQVLWTPPVNTYWLMYIDLIGKLAKAKNPEVLGDLKNKFGTVTLTKTKGWTYTNVKCPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQDNCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQINRLLKHYE*
DelMOWin2010_100096457	F092873	GAG	MNNILNKKFIEIASKSGYKTDFVERFMIKKELAPKTFTFRRPALEELLKKNNKKISDFIKDTYLAKEQKNKFAQISKILNPKKNAPKYYTENDLAFDLSHWFNSFANGDILVSPEYFVGNNVQIPVIGSLYGNGQIGLHKGKEINKINIHPKYGNCQAVVSQIGSSRGFMRLFLPSKNVDRLADNRFGFAQDKKSKIIWFGYIEPQSNGKYNILDKSYSTGKTYGILAENINLSWSAELKAEYYPTFYNN*
DelMOWin2010_100096459	F008915	AGGGGG	VNNEVNLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVATAKFLNCSKFEYHCNVGGVPDLVFKDLKLQVRTQLPKNNNNNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTFVLGQEKWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOWin2010_c10009645

Overview

Ecosystem & Geography

Associated Families

Sequences