NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10014023

Scaffold DelMOWin2010_c10014023


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10014023 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4413
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F009460Metagenome / Metatranscriptome317N
F017810Metagenome / Metatranscriptome238N
F038193Metagenome166Y
F051865Metagenome143N

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_100140231F017810N/AEQRVAKEHRANHTHLDALREQKLDLGKAYDRFGTKTNADRPQGTNLNIEV*
DelMOWin2010_100140235F038193N/AMQDDDLWVKSSSGELLTLQVKTTLEPRSDRSRPLNYAFTRADGDAQIFAYVAMDVRLFILRGPPTGKTVRIKPADFTQQNMDGSILRFLGGS*
DelMOWin2010_100140236F005590GGAGMNEQMTLLDRWKEMATIENARMHRRMIGRDDMHPYSHKPWAIEALRKEIERCLSRHGELSVGDLCSMIEQDVTHIDLGLKTLRERRRIVKTSYIHGQQLYRVSTKDERRL*
DelMOWin2010_100140237F009460AGGAGMAKWDLTKIENCSTVGDYIDEDDTQPNQPTSLMIVRSISRKADIMRMDAGRGPERRTMKQRAEEIIALCAMLERRL*
DelMOWin2010_100140238F051865GGAGGMTKTTWIALMVFSSPYECADFIEKYKANLYGPVQCVIQYEETNTVRPKRKPIQENNNG*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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