NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10023534

Scaffold DelMOWin2010_c10023534


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10023534 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3148
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F007750Metagenome345Y
F046309Metagenome151N

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_100235343F002374N/AMISNTNMNQFLLYASLIVASLSFFLCLYACARVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTEKLGG*
DelMOWin2010_100235346F001611AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRISSAVDTAGTTATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYVNNDLLTTGSQRNRVLVRFTNDTSGTRTIRCGVFIGG*
DelMOWin2010_100235347F007750AGGAGGLAFLGDFGKFFNLGSSKEVLGDVGQAVGTFVGGPAGGEVGKRLGETVGSATRSLSGDSGISALSTADQALEQSAVPVSIIGNRPQETSTMTGTTGMINQAGFGFLPQIATGVGRFLGSKSGQIATGVGTAVGLGSSQFMGMNSSEKPVLTQSRRNKSKVRQLVNFMGIEGTAQFLSQSIGQNVSPNDVVALLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN*
DelMOWin2010_100235348F046309N/ATGDIGTIKKSIQTLNNRINGLNSPKLNDELLNYAIKQQNGAMNPPTEKLGG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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