Basic Information | |
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Taxon OID | 3300000117 Open in IMG/M |
Scaffold ID | DelMOWin2010_c10028732 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2747 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001655 | Metagenome / Metatranscriptome | 656 | Y |
F002858 | Metagenome / Metatranscriptome | 525 | Y |
F024320 | Metagenome / Metatranscriptome | 206 | Y |
F030293 | Metagenome / Metatranscriptome | 186 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOWin2010_1002873210 | F030293 | N/A | DRVSIEALGLIPHFFERSLYIEGQSIQSVANKMDSLYHYGGFVYPFEGTIVDNKGRYLADNDEDGPLDPIAKITKLGFTLWVYPYSIVGLTDDKGNQKIARFD* |
DelMOWin2010_100287323 | F001655 | GGAG | MKQPDNDHVKHFGNDGSIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFENFEASVRRTAKALAESYTYWPEGYVHVQTIINQEYVNIV* |
DelMOWin2010_100287324 | F002858 | AGGAG | MAIDEKSIYLVDGGDYQIYCFGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDRGNVVMPRVTLDRILFIASDELPQAESEL* |
DelMOWin2010_100287326 | F024320 | AGGA | MTIDEYATDSGILDDNSGPTVDPETHAMVEHLVEFDTEMYRLQSRRKYKGLSYRHLERLMIDLHGEYWRDAL* |
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