NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KGI_S1_ANT01_95mDRAFT_c10182690

Scaffold KGI_S1_ANT01_95mDRAFT_c10182690


Overview

Basic Information
Taxon OID3300000119 Open in IMG/M
Scaffold IDKGI_S1_ANT01_95mDRAFT_c10182690 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)552
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameS1 site, Potter Cove, King George Island, Antarctic Peninsula
CoordinatesLat. (o)-62.230512Long. (o)-58.656117Alt. (m)Depth (m)9.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028441Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
KGI_S1_ANT01_95mDRAFT_101826902F028441N/ADKAKEVWVISPNLHYDTENKDFSELISVNLGQKTKYRYIVPGTLQVEKNIRLYKKMYNVSEKEIKNNFLILPSSEWIPFVMECAIYDASTKAVAYAAPANENSQDVIKFNKQTTSYMTASFKKMWKKYKRTNP*
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