NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TDF_MC_ARG01_113mDRAFT_c1000233

Scaffold TDF_MC_ARG01_113mDRAFT_c1000233


Overview

Basic Information
Taxon OID3300000125 Open in IMG/M
Scaffold IDTDF_MC_ARG01_113mDRAFT_c1000233 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 01_11.3m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5683
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameMC site, Ushuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.810872Long. (o)-68.295525Alt. (m)Depth (m)11.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066136Metagenome / Metatranscriptome127N
F085730Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
TDF_MC_ARG01_113mDRAFT_100023314F085730N/AMNNEQKNWHNEIIDRLVDHKGMDQDDFHDVLHDELDNMVIYNSESQXIVDDLNYDVFQENDLFGRANNINQAAYAALYELFYEEGSFTYEDYLNYEKA*
TDF_MC_ARG01_113mDRAFT_10002334F066136N/AMNKIKTLALLILLQSCYVEDILEQDIYVIPEVMCDCVYYDDYYDEWNKIKLRPGQHSFGWLSYSRKDYCEQVMKGYLIXCK*
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