NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SA_S1_NOR05_45mDRAFT_c10012419

Scaffold SA_S1_NOR05_45mDRAFT_c10012419


Overview

Basic Information
Taxon OID3300000127 Open in IMG/M
Scaffold IDSA_S1_NOR05_45mDRAFT_c10012419 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2643
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameNorway: Adventfjord, Svalbard Archipelago
CoordinatesLat. (o)78.237209Long. (o)15.677776Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022458Metagenome / Metatranscriptome214Y
F030151Metagenome / Metatranscriptome186Y
F068870Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
SA_S1_NOR05_45mDRAFT_100124192F030151N/AMIEFNADSIEDLEIEAQKRAHEVSIEVTKCVIAALNQDADKVVVGMLKNVELDLSVEKSGFLEALETNLVRCEEAEEYELCKESINWIKKLRV*
SA_S1_NOR05_45mDRAFT_100124193F022458N/AMIDDWLNQNPNDGFDPNDHGIEMNEIAKLHAMADMKGDQETWAREQANKFYNDFETLDIKESIIAVTSLIRTKVLNINQVNIMLDNMIKVFTLDEEYEKCHIVNEIKKGLSNDRI*
SA_S1_NOR05_45mDRAFT_100124196F068870N/AMDSLTSKPSCIEDLKELVNNLTDRDVNIKNHLQCIKSVLGDKRIKNDATKIKKIKQILKDG*
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