Scaffold LPaug09P1610mDRAFT

Basic Information
Taxon OID	3300000149 Open in IMG/M
Scaffold ID	LPaug09P1610mDRAFT_c1000779 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000149 Open in IMG/M

Scaffold ID

LPaug09P1610mDRAFT_c1000779 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	5651
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5651

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P16, Pacific Ocean
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-134.666667	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

P16, Pacific Ocean

Coordinates

Lat. (^o)

49.283333

Long. (^o)

-134.666667

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F031261	Metagenome	183	Y
F051470	Metagenome	144	N
F068823	Metagenome	124	N
F071663	Metagenome	122	N
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_100077910	F031261	GGAGG	MNRTRTYVMSVEKNSPEVLEQLNKLQEVRQGVRLLNRHSRRKHYVKCQGRWGRNNPDYNQRMIPFCPLDKAVKWDVYIYEK*
LPaug09P1610mDRAFT_100077911	F068823	AGGAGG	MSRTYNEYYFEKEDVEATLDKIGLLTRLLGIVYKEQGLDTIKYLVERNSNRKYNWLDDEMMTDIINTLEDKEYE*
LPaug09P1610mDRAFT_100077913	F051470	AGGAGG	VSNDNKWVHDYYDERHEHYIKVLSVDIKDVELVEAMADRMAMEDVENLEMEG*
LPaug09P1610mDRAFT_100077915	F071663	AGGAG	MIDNLIEEIIAEIKRDIHTNNLFTLRETLGTLLKDKDNKYILTNYLSEFPELREEYKEVKDNDKD*
LPaug09P1610mDRAFT_10007792	F094102	GAG	MKDTVLTPMNKEEYRVWENYVIKYNEDNPTNQIAYEVNWKDNIYKVKLLSLKIDNEGQE*
LPaug09P1610mDRAFT_10007797	F010532	GAGG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWEKPTDVSDVDVIHRIEEHLSYMVSSYLNKSYEGISVD*
LPaug09P1610mDRAFT_10007799	F010318	GAG	MNVDSDKPRYLECIYEAPITFDLEELGIDWDKVKDYHVKWGTLYVEFKDGTSEQHEGSQGETDWKWSAKENILTEGWSLVEGLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold LPaug09P1610mDRAFT_c1000779

Overview

Ecosystem & Geography

Associated Families

Sequences