NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPaug09P1610mDRAFT_c1003027

Scaffold LPaug09P1610mDRAFT_c1003027


Overview

Basic Information
Taxon OID3300000149 Open in IMG/M
Scaffold IDLPaug09P1610mDRAFT_c1003027 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2666
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F008154Metagenome338Y

Sequences

Protein IDFamilyRBSSequence
LPaug09P1610mDRAFT_10030272F000379AGGAGMRTGLEKIDYTTKTKIMVGYIDRSDNVVAVECGWETTPEALAGVLLQKYPTKEDAMTVVDSVVLVPSFKKDDYCYVDGYGDVIESNLSWNKEDMRKDVGHLFLFMKGTWQYSDNGIDWDPAFTSLNLSVDILHQQMEKA*
LPaug09P1610mDRAFT_10030275F008154AGGAGGMSKKKEDILLNDCYQEVFKVMIDLQAKYNNQMIAGTMMAQALRLYKSNLTDEGFEAMVKVIADTGDSIQPFDSPTVN*
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