NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold LPjun08P12500mDRAFT_c1002706

Scaffold LPjun08P12500mDRAFT_c1002706


Overview

Basic Information
Taxon OID3300000152 Open in IMG/M
Scaffold IDLPjun08P12500mDRAFT_c1002706 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3624
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP12, Pacific Ocean
CoordinatesLat. (o)48.97Long. (o)-130.666667Alt. (m)Depth (m)500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001625Metagenome / Metatranscriptome661Y
F064804Metagenome128Y
F084350Metagenome112N

Sequences

Protein IDFamilyRBSSequence
LPjun08P12500mDRAFT_10027062F084350AGTAGGMSTIGIYDAIDDCIDMIKKKWNNTSGGVVPRVERIWDEKTIGFGDMEISKGIILIEAMDEDVKYFSLYGADHMHTITLTLDVRSYQTLDRHAVIMKELARIIKDQIRRDGFVDLRIVGTVPLSRLYRNMFRHMIRVTYRKMNP*
LPjun08P12500mDRAFT_10027067F001625AGGMALTISMALTISTSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATNGVSADLKEGRISTLVAVIPTFTDSLHKVEYDKTNEKIKLLTVGGSSGAAFVELANASNLTNSKVFEFLVIGY*
LPjun08P12500mDRAFT_10027068F064804GAGMVQLYHADKLAKARDLVIIFLFGSILIESLTGLHLLGSWWQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.