Scaffold SI47jul10_150mDRAFT_c1020428

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SI47jul10_150mDRAFT_c1020428

Scaffold SI47jul10_150mDRAFT_c1020428

Overview

Basic Information
Taxon OID	3300000154 Open in IMG/M
Scaffold ID	SI47jul10_150mDRAFT_c1020428 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 150m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1467
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → Candidatus Scalindua rubra	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet 47, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071095	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
SI47jul10_150mDRAFT_10204283	F071095	N/A	MSWLNSLLNRNKFKTIQVELLGETEKSIQVKYGIHTTHLPKKLISFNSPNDRGSVKVRLPMWLYSKSFN*

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