Scaffold LPaug08P261000mDRAFT_c1009566

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPaug08P261000mDRAFT_c1009566

Scaffold LPaug08P261000mDRAFT_c1009566

Overview

Basic Information
Taxon OID	3300000157 Open in IMG/M
Scaffold ID	LPaug08P261000mDRAFT_c1009566 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1566
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Line P, North Pacific Ocean
Coordinates	Lat. (^o)	48.35	Long. (^o)	-123.3	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013775	Metagenome	268	Y
F015023	Metagenome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P261000mDRAFT_10095662	F015023	GAG	MKTTFKHIDLNDSVDDFMNHLNNTMNKPDGYSYDLNTRGSKYFKVEMLSHGSRSVYCFINKRNGEILKSAGWRAPAKGARGSVLVTESYINSDWSGGWLYKVFGNVYK*
LPaug08P261000mDRAFT_10095665	F013775	AGGA	MVEKRQYETIKEFAKDYRTEIIPMLKSKGFTLSINTSKGSYWNDGRMNFQIKKIPSNFYVWTNEYSRYNKTEKSMNLLNTIRDRVRNLLLSTDLDVDLNFDYGKDVRYKPIPEGWDDERNS*

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