NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPaug08P261000mDRAFT_c1013244

Scaffold LPaug08P261000mDRAFT_c1013244


Overview

Basic Information
Taxon OID3300000157 Open in IMG/M
Scaffold IDLPaug08P261000mDRAFT_c1013244 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1274
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameLine P, North Pacific Ocean
CoordinatesLat. (o)48.35Long. (o)-123.3Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F008692Metagenome / Metatranscriptome329Y
F015491Metagenome254Y
F028526Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
LPaug08P261000mDRAFT_10132443F008692AGGAGMAKRNGNKQKRQTKDEYYMPTSEEEFQADLDAQDMKYFQYCREQEEMYNDPVMNWSGLR*
LPaug08P261000mDRAFT_10132444F002348GGAMKPNEKWVKYGGWLLSLLSILIGASFLWPHVHVALLGIAFIYLGIRIFNFSTFDEYKEKRMKLLRKLLN*
LPaug08P261000mDRAFT_10132445F028526N/AMEEYLGSVGLKPELFLKLTKRISKQEYTMNFMEDRNGRKAMFYNYKGPEFKEGDCVLLKATIAEHRLDKYERGKPLTYLNRVTVLENKGKT*
LPaug08P261000mDRAFT_10132446F015491N/AVKQTKRQRKTKVPSRPQVTPRKWSKKTSRIFDKQFDRFLYDELYVPVKKSWGEEIMKYKR
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