Scaffold SI39no09_200mDRAFT_c1032352

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SI39no09_200mDRAFT_c1032352

Scaffold SI39no09_200mDRAFT_c1032352

Overview

Basic Information
Taxon OID	3300000164 Open in IMG/M
Scaffold ID	SI39no09_200mDRAFT_c1032352 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 200m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1184
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet 39, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.35	Long. (^o)	-123.29	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046847	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
SI39no09_200mDRAFT_10323523	F046847	GAGG	MADEAPKTEMVDTPKTENEVVISQSKLDALIDKGFSKGANRAKSELAESLGVDSIEQAQELINAKRETDEANKSDLDKAAELINTLNSTIKGLEANNNEIKADMAVQKVVSENGIKDADYFKHLLATASADDGFEQDAFIEQLKGDKPYLFSGGETQPKKVDATSNRASLDVGERVKSAKTMAELY

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