NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI39nov09_120mDRAFT_c1078895

Scaffold SI39nov09_120mDRAFT_c1078895


Overview

Basic Information
Taxon OID3300000167 Open in IMG/M
Scaffold IDSI39nov09_120mDRAFT_c1078895 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)588
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 39, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.35Long. (o)-123.29Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004269Metagenome / Metatranscriptome446Y
F031303Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
SI39nov09_120mDRAFT_10788951F004269N/AFWDFWVGSETVDPKFKDLGKDTVGCTRLPHGKYQYQVYLKKDAQVLMTDAQKKNLWEFLERNVDNCLVTNYNIIDFLEDKSPYCFGGYFYVKEEKYLTPIYMLAQQAIDKVIQFRKVKNGSNKKTTR*
SI39nov09_120mDRAFT_10788952F031303AGGMEAIKKLRDKNIFNDQSLVESMIEKNWMGSPVIKRSLLRVRKVRENDCVCEELGEADGKAYKIKYINILTVDGQEPN
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