NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPjun09P1210mDRAFT_c1007568

Scaffold LPjun09P1210mDRAFT_c1007568


Overview

Basic Information
Taxon OID3300000168 Open in IMG/M
Scaffold IDLPjun09P1210mDRAFT_c1007568 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP12, Pacific Ocean
CoordinatesLat. (o)48.97Long. (o)-130.666667Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047093Metagenome / Metatranscriptome150Y
F105295Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
LPjun09P1210mDRAFT_10075681F047093N/ASVTVDIPSAWASGGAGDYVEVGDTANGSRFIRSGDIDVTKVGQYHSQYQYEYVSEGVITAEVTNGAASAGTATVSVVLAGEATVTDYGSINNAQNSNNDLGNIA*
LPjun09P1210mDRAFT_10075682F105295AGGAGMVDSVKNYGIAGASQTVELGKQGAVIDATDTAIISLKDKDGALEEVMIANGTASSHAVTKAQLDASSSQKLNYISATVNYDGGTTSLGTAAANTTIQKVVVEKGTGNWTGHNDTTEITVGDAADNDRLFNGFDPDGGQFIFDNDHTYASSTALLVYITQGGASAGTASVKVFYSGTIE*
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