NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI60aug11_200mDRAFT_c1013311

Scaffold SI60aug11_200mDRAFT_c1013311


Overview

Basic Information
Taxon OID3300000174 Open in IMG/M
Scaffold IDSI60aug11_200mDRAFT_c1013311 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2111
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 60, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046847Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
SI60aug11_200mDRAFT_10133114F046847GAGGMPDVDKTETVNTPKTENEVVISQSKLDALIDKGFSKGAKRAKSELTEQLGVDSFEQARELILAKKEADDANKSELEKAAELISTLNSTIEGLETNNQKIQADMAIQKVVSDNGIKDADYFKHLLAQASRSE
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