Scaffold LPjun09P16500mDRAFT_c1014651

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPjun09P16500mDRAFT_c1014651

Scaffold LPjun09P16500mDRAFT_c1014651

Overview

Basic Information
Taxon OID	3300000179 Open in IMG/M
Scaffold ID	LPjun09P16500mDRAFT_c1014651 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1304
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P16, Pacific Ocean
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-134.666667	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076184	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
LPjun09P16500mDRAFT_10146512	F076184	N/A	MIPFLEKFNYVQPVIKPYDKNGVVVYKDKDSRWHLTVDGDQMMLYTVGHEQALHFYSHYKLAFGHVICTGLGFGVREQWLATKPEVTKITVLEKNKSVIDYHKDIGTQWSDKIEIINCDANEYKGSCDFLSIDHYERHDTSSIINSIKTTEKNINCSVMWFWLLERWLDSGSIENNKKDYVYYQPWEKNDLYQSYNKLKTFLDLKSLPELDIKQLTEFVNVYWNRI*

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