Scaffold LPjun08P4500mDRAFT_c1016307

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPjun08P4500mDRAFT_c1016307

Scaffold LPjun08P4500mDRAFT_c1016307

Overview

Basic Information
Taxon OID	3300000181 Open in IMG/M
Scaffold ID	LPjun08P4500mDRAFT_c1016307 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1099
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P4, Pacific Ocean
Coordinates	Lat. (^o)	48.65	Long. (^o)	-126.666667	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018553	Metagenome / Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun08P4500mDRAFT_10163073	F018553	N/A	MLCIPRLRIAILNEEIALWEERLRDNPDDIPYLGYIRETMKSRIKELEESEREGEQ*

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