NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_c106791

Scaffold Draft_c106791


Overview

Basic Information
Taxon OID3300000185 Open in IMG/M
Scaffold IDDraft_c106791 Open in IMG/M
Source Dataset NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameSyncrude, Ft. McMurray, Alberta
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096626Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Draft_1067911F096626N/AAMPDTSEVPAQFRPLVDSALLDACEAVLNTFVTSKTTAGNANIPATLFTLESLLTATASRRMTSAMLLGMWRNSSKYVLDVAPKLTSMAGSALLRYQANIERHEKRIAALAGRSPELSLSAADLDKLMVNLADDDADTPFGTYLADRTEEVRSKLVEDSDAL*

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