Scaffold SI47jul10_135mDRAFT_c1021108

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SI47jul10_135mDRAFT_c1021108

Scaffold SI47jul10_135mDRAFT_c1021108

Overview

Basic Information
Taxon OID	3300000193 Open in IMG/M
Scaffold ID	SI47jul10_135mDRAFT_c1021108 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 135m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1364
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Luminiphilus → Luminiphilus syltensis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet 47, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)	135
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058538	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
SI47jul10_135mDRAFT_10211081	F058538	N/A	CGYWIFRGRNMYSQYETTVINRRRLHDILNWVNQKYHLEYEVVQKNRDVFYVIFHDLNIKQTVAIQKQIKGIAQPEHFDMH*

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