NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LP_F_10_S103_200DRAFT_c1023009

Scaffold LP_F_10_S103_200DRAFT_c1023009


Overview

Basic Information
Taxon OID3300000198 Open in IMG/M
Scaffold IDLP_F_10_S103_200DRAFT_c1023009 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_200
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1080
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameLine P, North Pacific Ocean
CoordinatesLat. (o)48.35Long. (o)-123.3Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029271Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
LP_F_10_S103_200DRAFT_10230093F029271AGGMSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYGAAKSYVADIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*

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