NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LowMDraftT1_c244067

Scaffold LowMDraftT1_c244067


Overview

Basic Information
Taxon OID3300000210 Open in IMG/M
Scaffold IDLowMDraftT1_c244067 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Low methane emitting sheep
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1323
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep

Source Dataset Sampling Location
Location NameHamilton, New Zealand
CoordinatesLat. (o)-45.483333Long. (o)170.716667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060516Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
LowMDraftT1_2440671F060516N/ASFIKNTEVLKWNKEELSAQVLSENDLNNPNANPNSAGAFCVYKVVTFKNKKNLLKVKLEKIFIKYYNDLTGSLFYDPKTNLFLIGFNSGKIIFYKVLPESVYTQFDYMSDLKYHSSKVTGIALNNMTNNFYTCGADGKFCQGVINLIYRENYSPELIHQNSAGYSYMYFDKKNERIYLSTYNGHFEVYLISTELATFITEINTSNHKYCLNDLYPYAIKNYLFSCSDLGNVSVFDLGKPGQEKTTKELSYFNYYGAKFKIKSILYDSDTNQVITGDNYGRLIFWSLKYGKPIHVTKVTQNGKAILRIRFIDNSEEPNKLLLVSSVDNNIYFVKLPLKWVENEDIEKYEQVEIKIRSDLNAMMKIQDFLAKDEDYNSDEDSLNGWDYFANDAKEEQDKLKNKK*
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