NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB_LI09_3DRAFT_1000016

Scaffold TB_LI09_3DRAFT_1000016


Overview

Basic Information
Taxon OID3300000229 Open in IMG/M
Scaffold IDTB_LI09_3DRAFT_1000016 Open in IMG/M
Source Dataset NameGroundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)23855
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location
Location NameLago Infinito, wall in 7.1 m depth, Frasassi Caves, Italy
CoordinatesLat. (o)43.383333Long. (o)12.95Alt. (m)Depth (m)7.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105447Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
TB_LI09_3DRAFT_100001614F105447AGGAGGMKPLKLILKIILFASLLLAHSSAATYGQDLPVPFDRIKELAITQGQKNDDGAFMWERTVENVEFWMVYSPSDESIGCGQRTDSGSYGWGIAYGLKGDFQFVEARMGQIVNFLVIGLENAIEIVNQFFKEVEPLIENSKDSPTGGKWVSI*
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