Scaffold TB_LI09_3DRAFT_1031821

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold TB_LI09_3DRAFT_1031821

Scaffold TB_LI09_3DRAFT_1031821

Overview

Basic Information
Taxon OID	3300000229 Open in IMG/M
Scaffold ID	TB_LI09_3DRAFT_1031821 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1317
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location
Location Name	Lago Infinito, wall in 7.1 m depth, Frasassi Caves, Italy
Coordinates	Lat. (^o)	43.383333	Long. (^o)	12.95	Alt. (m)		Depth (m)	7.1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105447	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
TB_LI09_3DRAFT_10318211	F105447	AGGAGG	MKPLKLILKIILFVSLLLAHSSAVTYGQELPMPFDRIKTLAVTQGQKNDDGAFMWERTVENVEFWMVYSPSDESIGCGQRTDSGSYGWGIAYGLKGDFQFVEARMGQIVNFLVIGLENAIEIVNQFFKEVEPLIENSKDSPTGGKWVSI*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.