NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TDF_OR_ARG05_123mDRAFT_1027282

Scaffold TDF_OR_ARG05_123mDRAFT_1027282


Overview

Basic Information
Taxon OID3300000242 Open in IMG/M
Scaffold IDTDF_OR_ARG05_123mDRAFT_1027282 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1286
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameUshuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.810872Long. (o)-68.295525Alt. (m)Depth (m)12.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051139Metagenome / Metatranscriptome144Y
F072257Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
TDF_OR_ARG05_123mDRAFT_10272821F051139N/AHQLHDFLGEVLDYYGQENSDFNMENSEIELIEDIRHELFNQIPDEKPIETTYAFTAVANLTSITTIKLYEINRVETGGFLITNDRGSEIFCIDKGCSHLSSDQSKNWKFITITND*
TDF_OR_ARG05_123mDRAFT_10272822F072257N/AMQELDKVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYEFFKESWCVSDQGMTDFYKQMLYTFAYEQRNVPEHAFINSCMWAYHSAISSRDEYCIDSRPIPCQKYCKRKTTTCR*
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