NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPaug09P26500mDRAFT_1002832

Scaffold LPaug09P26500mDRAFT_1002832


Overview

Basic Information
Taxon OID3300000247 Open in IMG/M
Scaffold IDLPaug09P26500mDRAFT_1002832 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P26 500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3829
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP26, Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032446Metagenome / Metatranscriptome180Y
F033591Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
LPaug09P26500mDRAFT_10028321F033591AGGMKFADGIDKNLLPKNILILNGRRKWETLVEFCLKYDINFKMFEVDAGDFFNVSKKLEPYIILLPPEQYYNPQYYIDTLDFVPEYILNCRDDFSGTTLEHTLSTHYNTKTQFDERALNFFTSKKEQDRVCKLMNIPTLDEGSIDDKIIVKLDKGYGGGTNYEVVDKKDYIPKENDFIQRYIDYDYICQQHVLVDDNGDYHIYNHSIGKFGDGVIVGNNIPYLYQYPFVDFPKDEIDIVEEFYKKLKEHITVKNRILITEFSKERNGKLRFQEFNSRPSGEFELGTFDWKIGKFNTLVDLFTNNVQDEIEYYQQNIEIYFDNVRDVEVFGWGTYDGLKITTLPYSETIKTWNTK*
LPaug09P26500mDRAFT_10028325F032446GAGMTSKKYENLKWFATFMFVLAGVLISLNVEQSKWAFPLFASGHMIVLFVFLKLKDKPMIFQNSFFLSIDLLGIYQWLLAPIF*
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