Scaffold LP_A_09_P04_1300DRAFT_1045855

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LP_A_09_P04_1300DRAFT_1045855

Scaffold LP_A_09_P04_1300DRAFT_1045855

Overview

Basic Information
Taxon OID	3300000262 Open in IMG/M
Scaffold ID	LP_A_09_P04_1300DRAFT_1045855 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1300
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	581
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Line P, Station P4
Coordinates	Lat. (^o)	48.65	Long. (^o)	-126.666667	Alt. (m)		Depth (m)	1300
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044590	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P04_1300DRAFT_10458552	F044590	N/A	MIIKINDRVEVRPVGGGMLRDGIITNISISTNVELDPAGERGANVEELDLDLEFPGSIGYTDVTFNDEGDETGDSRWAYFGQIKQNE*

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