Scaffold LP_A_09_P04_10DRAFT

Basic Information
Taxon OID	3300000265 Open in IMG/M
Scaffold ID	LP_A_09_P04_10DRAFT_1002600 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000265 Open in IMG/M

Scaffold ID

LP_A_09_P04_10DRAFT_1002600 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5178
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5178

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (31.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Line P, Station P4
Coordinates	Lat. (^o)	48.65	Long. (^o)	-126.666667	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Line P, Station P4

Coordinates

Lat. (^o)

48.65

Long. (^o)

-126.666667

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F024348	Metagenome / Metatranscriptome	206	Y
F029762	Metagenome / Metatranscriptome	187	Y
F056899	Metagenome / Metatranscriptome	137	N
F063073	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P04_10DRAFT_100260015	F005132	N/A	MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYEDLEAKVLAETLDVAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCNNDLFDEQDNYQGDVFYPQDGITNQTCEDGGVSYNL*
LP_A_09_P04_10DRAFT_100260016	F029762	N/A	VSWVKKEEDAPTFKPLDVANLDKTIDVLSKLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREILLDSVNRIFATIGYDGMDLGIVEQQINLESIKGANTEDV
LP_A_09_P04_10DRAFT_10026002	F063073	N/A	MNLTAEEKNNTPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLSINDVIFKVDISDYTGIEGGFGYIFFNPSSGRLLIEKDNVKKVYKVEVDLLDESVY*
LP_A_09_P04_10DRAFT_10026004	F056899	N/A	MSKNTFVRASISGDYGQDLVMKYLKDKGYEVEEAPKKLFYDWDVKGIKNGRTVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRNADSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLQMANYKVVGNSATGDDNAQGWIPPLHELLVSRYGYKATIDLTEYA*
LP_A_09_P04_10DRAFT_10026007	F013231	N/A	MINQRNYQTCKLIKNRVDLYLYEMAILFANLGTDSTQEEVAEAYKREAEYIELIAELDPEKGDRLRSSY*
LP_A_09_P04_10DRAFT_10026008	F024348	N/A	MLFEEYYEDLTDGEANLILDIYRVIDLLVYNHEPVTLVRLGHELGIKTQELSDYLPIIITILNKVEDQYAEVRQVAD*
LP_A_09_P04_10DRAFT_10026009	F008384	AGTAG	MPRYDKSLIEREAIISVQQGSLTNELGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYEKGKSAANLIISIIYSTMTNKIVSLNHSDVYGHNIKGYLTYIEDGEAVTXLKRYIKDDYLSEKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold LP_A_09_P04_10DRAFT_1002600

Overview

Ecosystem & Geography

Associated Families

Sequences