NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LP_A_09_P04_10DRAFT_1011141

Scaffold LP_A_09_P04_10DRAFT_1011141


Overview

Basic Information
Taxon OID3300000265 Open in IMG/M
Scaffold IDLP_A_09_P04_10DRAFT_1011141 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1930
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameLine P, Station P4
CoordinatesLat. (o)48.65Long. (o)-126.666667Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007723Metagenome / Metatranscriptome346Y
F021182Metagenome / Metatranscriptome220Y
F022080Metagenome / Metatranscriptome216Y
F031507Metagenome / Metatranscriptome182Y
F064088Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
LP_A_09_P04_10DRAFT_10111413F007723N/AMIKAIKSKMLTYLFKDWVMNETDLETLKVSKQFIRKREVEITGHVPVLGFRSHLPQED*
LP_A_09_P04_10DRAFT_10111415F031507N/AMINTKIKFKNKYGQIQEGIVTDDNYQCDYDPILNGSVRVSVDYGSNLLGTVNTLIDKSQIIWA*
LP_A_09_P04_10DRAFT_10111416F022080N/AMINETHIGLVRMNESKTELYDSQYMLSKWERNLGDVLNIDGTKWLVGIIGDTKNDVISALNKIVKKHNSIINKKNYQQRKKEKMVMSQITNNIMKELNL*
LP_A_09_P04_10DRAFT_10111417F021182N/AMNKYENGYMGKIEYWTEKLNAEVFQTQKPDLVEIDSIHKKLDYFIQKQTDLVVSKIREK*
LP_A_09_P04_10DRAFT_10111418F064088N/AYDYFGVGDSLIRERLFTKLSEELETSYDYIYDLWLK*
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