NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M3P_10013126

Scaffold M3P_10013126


Overview

Basic Information
Taxon OID3300000268 Open in IMG/M
Scaffold IDM3P_10013126 Open in IMG/M
Source Dataset NameLotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3011
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Source Dataset Sampling Location
Location NameUSA: Solway, Minnesota
CoordinatesLat. (o)47.349634Long. (o)-95.182806Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F006220Metagenome378Y
F010398Metagenome304Y
F013084Metagenome274Y
F048994Metagenome147N

Sequences

Protein IDFamilyRBSSequence
M3P_1001312610F004583AGGAGMKSTRNSDRLRDILLSTRHQIVALKDIQIDLMRYDAKVANQVATQISALEEVYKHQLSLVTLAENVEPKRNGWFSGQFKTKEDRLANIMD*
M3P_100131262F010398AGGAGMEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWNELNPHLIQAVVDSESDIDYTEIHCESSVYADTLTIDDSKHMTTVYYDKNRKTDSFEIM*
M3P_100131266F013084N/AMGILSILGLMEETKNIVLHRGHNVKNWLVLGNDCYALECADCKMTCMIKEKPLPNEIKASGEALAVNCVKPVKEKKLRKK*
M3P_100131268F006220GAGGMKKFKKFIEELAIASGTEMMRASQMRTTSFKDKSKYSRKQKHKNRQDKNSGDSF*
M3P_100131269F048994N/AMIGTVMIEFGAMNLYVNGVCVATTSTMAGIKHAAKRYNLQGYIMATG*
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