NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold WSSedB1CaDRAFT_10000792

Scaffold WSSedB1CaDRAFT_10000792


Overview

Basic Information
Taxon OID3300000313 Open in IMG/M
Scaffold IDWSSedB1CaDRAFT_10000792 Open in IMG/M
Source Dataset NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Cattail
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12904
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location NameTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.10726Long. (o)-121.648538Alt. (m)Depth (m)1.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006433Metagenome / Metatranscriptome373Y
F007657Metagenome / Metatranscriptome347Y
F061592Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
WSSedB1CaDRAFT_1000079210F061592AGGAMSAATASDANPDGAQQDDADAMKDQLRKDVASWREGRADGASRGATELSVAVTRSIVPPTTAKMKRAKPAAAEAKPAASTEKKPFGMSYDGTSRADYIKLMISRGAR*
WSSedB1CaDRAFT_100007928F006433N/AMSDSSYRIVHREDDSFAVEIVRVGALPQTAAGFATEAAAQGWIAQDQRLRTGSDPFGTPAAKRWRGV*
WSSedB1CaDRAFT_100007929F007657N/AVSWVTFEAATGGLVVVQLSHVVAIYDEQGEVKLATTSGGVHILKDITVQRAAGIVTRAQEAVAVRPER*
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