Scaffold WSSedL2TaDRAFT_1033058

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold WSSedL2TaDRAFT_1033058

Scaffold WSSedL2TaDRAFT_1033058

Overview

Basic Information
Taxon OID	3300000317 Open in IMG/M
Scaffold ID	WSSedL2TaDRAFT_1033058 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L2 Tule
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	565
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location Name	Twitchell Island in the Sacramento/San Joaquin Delta, CA
Coordinates	Lat. (^o)	38.106796	Long. (^o)	-121.646457	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032706	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
WSSedL2TaDRAFT_10330582	F032706	AGAAGG	MKAPKKTASIFQWVADSAATCLGPTRARVAEVRVSDPIPGRVCVPAAGHAARARQEVSRLVLYERKGDIGFITAKVNNVGEVYDEIDALLDEIERDKNIRTVAIFTLDGLFAALPIR*

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