Scaffold LPaug08P121000mDRAFT_1000882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPaug08P121000mDRAFT_1000882

Scaffold LPaug08P121000mDRAFT_1000882

Overview

Basic Information
Taxon OID	3300000322 Open in IMG/M
Scaffold ID	LPaug08P121000mDRAFT_1000882 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P12 1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	5403
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P12, Pacific Ocean
Coordinates	Lat. (^o)	48.97	Long. (^o)	-130.666667	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027993	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P121000mDRAFT_10008828	F027993	N/A	LIAKAANKEAAELPKAAKIKPNLRPILLIILAAKIVKIAVPTTYKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT*

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