NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPaug08P121000mDRAFT_1037039

Scaffold LPaug08P121000mDRAFT_1037039


Overview

Basic Information
Taxon OID3300000322 Open in IMG/M
Scaffold IDLPaug08P121000mDRAFT_1037039 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P12 1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)551
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP12, Pacific Ocean
CoordinatesLat. (o)48.97Long. (o)-130.666667Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006321Metagenome / Metatranscriptome376Y

Sequences

Protein IDFamilyRBSSequence
LPaug08P121000mDRAFT_10370391F006321N/AMAEEKRGIEETKDILDFMFSFVEAVGKAKKDGEMSWSDARYFIDPVKKLFEAVDDIEEVLPEIEDLSEEEYDQLVEYVRGKWDYDEENLDWIVDTAIDAGKSILMLINMKK*
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