NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPaug09P202000mDRAFT_1013462

Scaffold LPaug09P202000mDRAFT_1013462


Overview

Basic Information
Taxon OID3300000323 Open in IMG/M
Scaffold IDLPaug09P202000mDRAFT_1013462 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1439
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP20, Pacific Ocean
CoordinatesLat. (o)49.566667Long. (o)-138.666667Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076184Metagenome118N

Sequences

Protein IDFamilyRBSSequence
LPaug09P202000mDRAFT_10134622F076184N/AMIPFLEKLNYVPPVIKPYDKNGVVVYKDKDSRWHLTVDGAQMMLYTVGHEQALHFYSHYKLAFGYVICTGLGFGVREQWLATKPEVTKITVLEKNKSVIDYHKDIGTQWSDKIEIINCDANKCTGSCDFLSIDHYEKEDTASIINSIKTTEKNISCSVMWFWLLERWLDSGSIENNKKDYVYYQPWEKNDLYQSYNKLKTFLDLKSLPE
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