Scaffold SI39nov09_100mDRAFT_1002770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SI39nov09_100mDRAFT_1002770

Scaffold SI39nov09_100mDRAFT_1002770

Overview

Basic Information
Taxon OID	3300000325 Open in IMG/M
Scaffold ID	SI39nov09_100mDRAFT_1002770 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 100m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	6111
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet 39, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.35	Long. (^o)	-123.29	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084347	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
SI39nov09_100mDRAFT_10027707	F084347	N/A	MITFPREKVAETNRTFKAWKTYQAMYLHFTGSYDYFKYYGNASWGTIASMEKSFAKFEHQTGFSWQRGFFTSLGKKYVVELDLIYYYLSQITRQDVSNRVFG*

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